Image Analyst

4 weeks ago

Mississauga, Canada Rangam Consultants Inc. Full time

**Project Role**

**Project Responsibilities**
- Write, modify, and run customized Python scripts and workflow scripts (Redun or Snakemake) for image processing, data QC and phenotypic analysis
- Converting raw images into processed tabular data, which entails alignment of phenotype and sequencing images, cell segmentation, barcode calling from multiplexed FISH or in situ sequencing images, phenotypic feature extraction, and synthesis of results in tabular format for downstream analysis
- Work closely with company’s bench scientists, statisticians, and software engineers to understand experiment-specific needs and implement corresponding analytical workflows
- Collaboratively and pragmatically solve scientific and computational challenges encountered at the forefront of single-cell image processing

**Education**
- MS or PhD in Bioinformatics, Computer Science, Machine Learning, Statistics or Computational Biology

**Required Skills**:

- Experience in processing and analyzing microscopy images.
- Experience in the Python biomedical image analysis ecosystem, including scipy, scikit-image, imageio, xarray.
- Self-motivated and enthusiastic about programming and tool development.
- Demonstrated ability to effectively communicate about complex bioinformatics problems to peers, users, and leadership.

**Nice-to-Have Expertise**
- Familiarity with deep learning approaches for cell segmentation, feature extraction, and phenotypic analysis
- Familiarity with high-dimensional multiplexed imaging data and associated data/image models
- Familiarity with domain-specific image processing tools, such as cellpose, cellprofiler and stardist
- Familiarity with workflow development tools, such as Snakemake or Redun
- Analysis of large chemical/genetic screening datasets
- Single-cell genomics and trajectory analysis

Pay: $54.00-$58.00 per hour

Schedule:

- 8 hour shift
- Monday to Friday

Ability to commute/relocate:

- Mississauga, ON L5N 5M8: reliably commute or plan to relocate before starting work (required)

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