Staff Software Engineer, Data Engineering and Infrastructure Specialist

6 days ago


Canada Helix Full time
About the Role

We are seeking a highly skilled Staff Software Engineer to join our Data Engineering team at Helix. As a key member of our team, you will play a pivotal role in driving our efforts to provide a first-in-class clinicogenomics research dataset.

Key Responsibilities
  • Develop and maintain data infrastructure and management strategy for clinical and genomic data, contributing to platform components and pipelines that increase the value and usability of these key assets.
  • Collaborate with Research, Bioinformatics, and other Engineering teams to maintain infrastructure that enables secure analysis of our quickly growing dataset.
  • Drive data infrastructure and data management strategy for clinical and genomic data, contributing to platform components and pipelines that increase the value and usability of these key assets.
Requirements
  • Bachelor's/Master's degree in Computer Science, Bioinformatics, Engineering, Mathematics, or a related field with 7+ years of experience; or PhD with 2+ years of experience.
  • Proficiency in Python, Go, Java, Scala, or similar programming languages.
  • Expertise with ETL pipeline automation and workflow management tools such as Airflow, AWS Glue, AWS Step Functions, and CI/CD.
  • Familiarity with database design, data manipulation, and data quality techniques.
  • Adaptable in a fast-paced startup environment where priorities may change quickly and frequently.
  • Experience with clinical data (EHR, FHIR, HL7, and/or claims data).
  • Experience with OHDSI tools and data formats (OMOP, Atlas, etc.).
  • Experience with AWS technologies such as AWS Lambda, S3, Athena, Redshift, Glue, API Gateway, Cognito, Lake Formation.
  • Experience with machine learning or AI technologies, including LLMs.
What We Offer
  • 18 well-being programs covering financial, legal, and wellness solutions.
  • Flexible PTO.
  • Remote options for many roles and a home office stipend.
About Helix

Helix is proud to be an equal opportunity employer, committed to providing employment opportunities regardless of race, religious creed, color, national origin, ancestry, physical disability, mental disability, medical condition, genetic information, marital status, sex, gender, gender identity, gender expression, pregnancy, childbirth and breastfeeding, age, sexual orientation, military or veteran status, or any other protected classification, in accordance with applicable federal, state, and local laws.



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