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PhD Researcher

4 weeks ago

Guelph, Ontario, Canada Aquaculture Association Of Canada Full time
Job Title: PhD Researcher - Gut Microbiome and Fish Nutrition

We are seeking a highly motivated PhD researcher to investigate the role of the gut microbiome on the health and nutrition of salmonid fishes.

Project Background:

The project is funded by NSERC Discovery in partnership with several feed companies and functional ingredient suppliers. The goal of this research project is to use a combination of cutting-edge in vivo and in vitro techniques to assess the contribution of nutrients from the gut microbiome to fish and influences from diet, life-stage and genetic family.

Project Activities:
  • Literature review and meta-analysis on fish gut microbiome studies
  • Bench trials (in vitro) using a Robogut bioreactor to simulate the fish gut
  • Feeding trials (in vivo) to determine effects of diet and family on the microbiome
  • Sampling fish at Ontario fish culture stations, fish farm hatcheries and the Ontario Aquaculture Research Centre
  • Nutritional analyses of feeds and fish (proximate, amino acids, fatty acids, etc)
  • Gene expression, genotyping and 16S microbiome sequence data analyses
  • Statistical analysis in R and writing several papers for publication
  • Presenting at Ontario Aquaculture and Canadian Aquaculture conferences
Required Skills:
  • Strong background in fish biology and aquaculture with additional knowledge on molecular biology, microbiology, immunology, genetics and/or nutrition
  • MSc degree in fish biology, aquaculture, animal science or a related field
  • Experience performing a literature review, laboratory work, data analysis (Excel), statistical analysis (R) and writing up results for publication
  • Molecular lab skills that include: DNA/RNA extractions, DNA/RNA quantification (gels, Nanodrop, Qubit or tapestation), PCR library preparation and/or qPCR
  • Ability to work independently, problem-solve and think critically
  • Strong written and oral communication skills and experience presenting at workshops and/or conferences
Preferred Skills:
  • Hands-on experience feeding and dissecting rainbow trout and Atlantic salmon
  • Experience assisting technicians and graduate students with fish research trials
  • Experience coding (C, Unix or Python) and using bioinformatic pipelines on sequence data from genotyping and/or the microbiome (Mothur, QIIME, DADA2)
How to Apply:

Qualified candidates should send their CV, transcript and cover letter (one-page) to Prof. David Huyben (huybend@uoguelph.ca) with the subject "PhD application".

Application Deadline: Monday March 11th 2024 at 11:59pm

Links to learn more:

  • Dr. David Huyben's faculty website
  • Dr. David Huyben's lab website
  • Grad Studies at ABSc website
  • Aquaculture Centre website